Defense Secretary Delfin Lorenzana said he had instructed the military to send its resupply vessels back to the Philippines-occupied Second Thomas Shoal, and that China "will not interfere" this time.
On Thursday, the Philippines condemned "in strongest terms actions of three Chinese coast guard vessels that it said blocked and used water cannon on resupply boats headed toward Second Thomas Shoal, which is locally known as Ayungin Shoal.
"The Chinese will not interfere per my conversation with the Chinese ambassador (Huang Xilian)," said Lorenzana.
Lorenzana said he and Huang had been talking "since the evening of the 16th while the incident was happening until yesterday, 20 November."
The Chinese Embassy in Manila did not immediately respond to Reuters' request for comment.
There will be no navy or coast guard escorts for the Philippines' resupply boats when they sail back to Second Thomas Shoal, Lorenzana said.
"They (China) have no right to impede, prevent or harass our ships within our EEZ (exclusive economic zone), whether we are fishing or bringing supplies to our detachment in the Sierra Madre (navy ship) in Ayungin Shoal," he said.
The chief of the Philippine military's Western Command, Vice Adm. Ramil Roberto Enriquez, meanwhile said the number of Chinese coast guard vessels in Second Thomas Shoal had gone down to two as of Saturday night from three on Tuesday.
He said the Chinese maritime militia vessels had also left the shoal. China has denied operating a militia.
There were 19 vessels near Second Thomas Shoal recently and 45 near Thitu Island, another Philippines-occupied area, according to National Security Adviser Hermogenes Esperon.